Publications

Computational Biology:

  • Sarkar, S. (2022). Communication network model of the immune system identifies the impact of interactions with SARS-CoV-2 proteins. arXiv preprint arXiv:2208.06355 (in review in npj Systems Biology and Applications).
  • Sarkar, S., & Rammohan, J. (2022). Nearly maximal information gain due to time integration in central dogma reactions. bioRxiv (in review in iScience).
  • Rammohan, J., Sarkar, S., & Ross, D. (2022) Single-cell measurement quality in bits.PLoS ONE 17(8): e0269272.
  • Sarkar, S., Hubbard, J. B., Halter, M., & Plant, A. L. (2021). Information Thermodynamics and Reducibility of Large Gene Networks. Entropy, 23(1), 63.
  • Sarkar, S., Tack, D., & Ross, D. (2020). Sparse estimation of mutual information landscapes quantifies information transmission through cellular biochemical reaction networks. Communications biology, 3(1), 1-8.
  • Hubbard, J. B., Halter, M., Sarkar, S., & Plant, A. L. (2020). The role of fluctuations in determining cellular network thermodynamics. PloS one, 15(3), e0230076.

Computational Biomaterials:

  • Sarkar, S., & Lin‐Gibson, S. (2018). Computational Design of Photocured Polymers Using Stochastic Reaction–Diffusion Simulation. Advanced Theory and Simulations, 1(7), 1800028.
  • Sarkar, S., Baker, P. J., Chan, E. P., Lin-Gibson, S., & Chiang, M. Y. (2017). Quantifying the sensitivity of the network structure and properties from simultaneous measurements during photopolymerization. Soft matter, 13(21), 3975-3983.

Computational Materials:

  • Sarkar, S., Warner, J. E., Aquino, W., & Grigoriu, M. D. (2014). Stochastic reduced order models for uncertainty quantification of intergranular corrosion rates. Corrosion Science, 80, 257-268.
  • Sarkar, S., & Aquino, W. (2013). Changes in electrodic reaction rates due to elastic stress and stress-induced surface patterns. Electrochimica Acta, 111, 814-822.
  • Sarkar, S., Warner, J. E., & Aquino, W. (2012). A numerical framework for the modeling of corrosive dissolution. Corrosion Science, 65, 502-511.
  • Sarkar, S., & Aquino, W. (2011). Electroneutrality and ionic interactions in the modeling of mass transport in dilute electrochemical systems. Electrochimica acta, 56(24), 8969-8978.